Version 1.0.2

Octopus bimaculoides genome assembly

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Songco-Casey, Jeremea O.;Coffing, Gabrielle;Piscopo, Denise;Pungor, Judit;Kern, Andrew;Miller, Adam;Niell, Cristopher

Description

To facilitate identification of molecular cell types in the Octopus bimaculoides optic lobe, we conducted high fidelity long-read genomic and transcriptomic sequencing. Here, we provide open access to these datafiles, which resulted in a single-cell atlas of the O. bimaculoides visual system (https://doi.org/10.1101/2022.06.11.495763). Below, we include a new genome assembly and annotation, phylogenetic trees for genes referenced in the preprint, and Cell Ranger outputs. Raw single-cell sequence files will be uploaded to NCBI’s SRA. If any of these files are used, we ask that the pre-print is cited. We will update this depository with citation information when our manuscript is published.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.3

FAIR Score

79%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

Assigned Domain

Subfield

Ecology, Evolution, Behavior and Systematics

Field

Agricultural and Biological Sciences

Domain

Life Sciences

Confidence Score

100%

Source

Open Alex

Keywords

octopusgenomescRNA-seq

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00