Historical Arabidopsis thaliana genomes from across its native range.
View DatasetLopez, Lua;Marciniak, Stephanie;Perry, George H;Lasky, Jesse R.
Description
We report short-read Illumina sequencing of 131 Arabidopsis thaliana herbarium specimens across its native range collected from 1820 to 2010. Sequencing depth averaged ~6X across these genomes. Sequences from the herbarium samples showed the expected degradation patterns typical of ancient DNA with endogenous DNA content between 18.01-88.26% (mean 56%; median 74%) and enrichment of cytosine to thymine substitutions at fragment ends. We provide access to the sequences upon request.
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Publication Details
DOI
Publisher
Zenodo
Subfield
Molecular Biology
Field
Biochemistry, Genetics and Molecular Biology
Domain
Life Sciences
Confidence Score
51%
Source
Scholar Data Model
Keywords
Arabidopsis thalianaancient DNA