Historical Arabidopsis thaliana genomes from across its native range.

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Lopez, Lua;Marciniak, Stephanie;Perry, George H;Lasky, Jesse R.

Description

We report short-read Illumina sequencing of 131 Arabidopsis thaliana herbarium specimens across its native range collected from 1820 to 2010. Sequencing depth averaged ~6X across these genomes. Sequences from the herbarium samples showed the expected degradation patterns typical of ancient DNA with endogenous DNA content between 18.01-88.26% (mean 56%; median 74%) and enrichment of cytosine to thymine substitutions at fragment ends. We provide access to the sequences upon request.

Citations (0)

Mentions (0)

Metrics

Dataset Index

2.3

FAIR Score

81%

Citations

4

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

Open Access

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

51%

Source

Scholar Data Model

Keywords

Arabidopsis thalianaancient DNA

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00