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Published on 01 January 2022

Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 852671126

View Dataset
Kalmbach, Brian;Lee, Brian R.;De Kock, Christiaan P. J.;Lein, Ed;Molnar, Gabor;Tamás, Gábor;Mansvelder, Huibert D.;Miller, Jeremy;Ting, Jonathan T.;Kruse, Lauren;Jorstad, Nikolas;Dalley, Rachel;Sorensen, Staci A.;Chartrand, Tom;Bakken, Trygve;Allen Institute For Brain Science

Description

Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

50%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Brain Image Library

Assigned Domain

Subfield

Developmental Neuroscience

Field

Neuroscience

Domain

Life Sciences

Confidence Score

45%

Source

Scholar Data Model

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00