A biodiversity dataset graph: LACMIP_9951-3_Helicancylus_pilsbryi

A biodiversity dataset graph: LACMIP_9951-3_Helicancylus_pilsbryi The intended use of this archive is to facilitate (meta-)analysis of the Helicancylus pilsbryi (Anderson, 1938) - LACMIP 9951.3 - LACM Invertebrate Paleontology - 576cbe09-6484-4f87-b15d-b8a17c90a835 https://www.gbif.org/occurrence/2012640793 (LACMIP_9951-3_Helicancylus_pilsbryi). LACMIP_9951-3_Helicancylus_pilsbryi provides media and a wavefront 3D object model, of amminote specimen Helicancylus pilsbryi (Anderson, 1938) - LACMIP 9951.3 - LACM Invertebrate Paleontology - 576cbe09-6484-4f87-b15d-b8a17c90a835 https://www.gbif.org/occurrence/2012640793 as well as the original digital data/image files that were used to find and build this 3D model. This dataset provides versioned snapshots of the LACMIP_9951-3_Helicancylus_pilsbryi network as tracked by Preston [2,3] between 2023-01-27 and 2023-01-27 using "preston update -u http://ipt.idigbio.org/archive.do?r=lacm-ip". The archive consists of individual files with hexadecimal filenames (e.g., 009d54a6509cbf5eb8168d23edaaa6c05a5ea9bd156c78869414b2356292fb1c) to allow for parallel file downloads. The archive contains three types of files: index files, provenance logs and data files. Index files provide a way to links provenance files in time to establish a versioning mechanism. Provenance files describe how, when, what and where the LACMIP_9951-3_Helicancylus_pilsbryi content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 . To retrieve and verify the downloaded LACMIP_9951-3_Helicancylus_pilsbryi biodiversity dataset graph, download all files. Then, extract the archives into a "data" folder. Alternatively, you can use the preston[2] command-line tool to "clone" this dataset using: $ java -jar preston.jar clone --remote https://zenodo.org/record/7577643/files After that, verify the index of the archive by reproducing the following provenance log history: $ java -jar preston.jar history --log tsv
hash://sha256/4e0f93cb1fa122c25e853709b3d28ce9d9f898e9fb30c858eb5def0ae4bfc73e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/8ad31345ca327f903fe3c6a6df73847635bb82b224977794ce8c76ef483eb96e
hash://sha256/8ad31345ca327f903fe3c6a6df73847635bb82b224977794ce8c76ef483eb96e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/134e3c2d8978baaa003e8990b442b21a7bb47e9413b86cde11dbe49b5a31504c
hash://sha256/134e3c2d8978baaa003e8990b442b21a7bb47e9413b86cde11dbe49b5a31504c http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/ead72d5f9e65313563da7e3ec7700ff671d77c104323e0d11ce2444eae372b63
hash://sha256/ead72d5f9e65313563da7e3ec7700ff671d77c104323e0d11ce2444eae372b63 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/6c8ed9f9f025144e50775eeacbf4274e25bd8f635f61967f2b5761220168fec4
hash://sha256/6c8ed9f9f025144e50775eeacbf4274e25bd8f635f61967f2b5761220168fec4 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/3f2005426df734fe242a5b991d4fcb1752eebda005e2d1998e3711469f95ea9e
hash://sha256/3f2005426df734fe242a5b991d4fcb1752eebda005e2d1998e3711469f95ea9e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/d1a1d4745965e3d9427387c7e3cd2556aec37cd0d76dd8e900cd2ce28d882871
hash://sha256/d1a1d4745965e3d9427387c7e3cd2556aec37cd0d76dd8e900cd2ce28d882871 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/ad85a504594151e2c2617ada471fda4d785a2f8be686b49708876f1624956ecb
hash://sha256/ad85a504594151e2c2617ada471fda4d785a2f8be686b49708876f1624956ecb http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/d233af3699e8937aff1d8677676593d500656549cc314ca95a34e4c71623eee1
hash://sha256/d233af3699e8937aff1d8677676593d500656549cc314ca95a34e4c71623eee1 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/d5a3f1f3d3d1f83c4a885e757dcc9035785101844ba2b60aa4f6670c9d82b248
urn:uuid:0659a54f-b713-4f86-a917-5be166a14110 http://purl.org/pav/hasVersion hash://sha256/d5a3f1f3d3d1f83c4a885e757dcc9035785101844ba2b60aa4f6670c9d82b248 To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while. $ java -jar preston.jar verify
replace wwith preston verify | head -n4 Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". Files in this data publication: --- start of file descriptions --- -- description of archive and its contents (this file) --
README -- executable java jar containing preston [2,3] v0.5.2. --
preston.jar -- preston archives containing LACMIP_9951-3_Helicancylus_pilsbryi data files, associated provenance logs and a provenance index --
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References [1] Helicancylus pilsbryi (Anderson, 1938) - LACMIP 9951.3 - LACM Invertebrate Paleontology - 576cbe09-6484-4f87-b15d-b8a17c90a835 https://www.gbif.org/occurrence/2012640793 (LACMIP_9951-3_Helicancylus_pilsbryi, http://ipt.idigbio.org/archive.do?r=lacm-ip) accessed from 2023-01-27 to 2023-01-27 with provenance hash://sha256/d5a3f1f3d3d1f83c4a885e757dcc9035785101844ba2b60aa4f6670c9d82b248.
[2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 .
[3] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2020.101132
This work is funded in part by grant NSF OAC 1839201 and NSF DBI 2102006 from the National Science Foundation.