Published on 01 January 2023

PhiSpy Predictions in GenBank Format

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Edwards, Robert

Description

This file has GenBank format flat files for all the prophage regions we identified.
The GenBank files are essentially a slice of all the data from the genome annotation. We added a few PhiSpy-specific outputs, like hits to VOGdb proteins and the E-value of those matches.
We searched everything against PHROGs, but have yet to include those hits in the GenBank files.
Because there is one file for each prophage prediction (5,005,011 files), we separate them into a directory hierarchy and use the NCBI convention for storing files which uses the first three characters and then separates the numbers into directories, so if you have an accession. GCA_019958295.1, the GenBank files will be in the subdirectory phispy/GCA/019/958/295/

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.1

FAIR Score

13%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Flinders University

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

44%

Source

Scholar Data Model

Keywords

Genomics and transcriptomics

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00