Additional file 1 of Genome-centric metagenomics reveals the host-driven dynamics and ecological role of CPR bacteria in an activated sludge system

Additional file 1: Table S1. Summary of 43 CPR markers used by CheckM for genome quality estimation. Table S2. Summary of the studied CPR MAGs in the present study. Table S3. Pairwise ANI analysis of all studied CPR MAGs in the present study. Table S4. Relative abundance of CPR bacteria in Shatin activated sludge samples. Table S5. Estimated completeness (%) of KEGG modules in the recovered CPR MAGs from Shatin activated sludge. Table S6. The relative abundances of the newly recovered bacterial MAGs in penicillin treated activated sludge metagenome. Table S7. Summary of public CPR bacteria used for pangenomic analysis. Table S8. Carbohydrate-active enzymes frequency in CPR bacteria recovered from activated sludge metagenomes of Shatin WWTP. Table S9. Summary of potential lacterial gene transfer events between CPR bacteria and other prokaryotic organisms (non-CPR bacteria and archaea) in Shatin WWTP. Table S10. Eggnog annotation results of the ORFs on putative horizontal transferred DNA fragments between CPR bacteria and prokaryotic organisms in Shatin WWTP. Table S11. Summary of potential horizontal gene transfer events between CPR bacteria and phages in Shatin WWTP. Table S12. Eggnog annotation results of the ORFs on putative horizontal transferred DNA fragments between CPR bacteria and phages in Shatin WWTP.