Published on 24 May 2023

TMI cheese metagenomics sourmash output files

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McDaniel, Elizabeth;Weiss, Emily;Dutton, Rachel;Borges, Adair;Reiter, Taylor

Description

Sourmash output files from signature sketches, compare, gather, and taxonomy of time-series cheese metagenomes generated using both short- and long-read sequencing technologies. Originally generated as part of the pub "Paired long- and short-read metagenomics of cheese rind microbial communities at multiple time points". Analysis code of this data provided on Github at https://github.com/Arcadia-Science/metagenomics-of-cheese-rind-microbiomes. To directly analyze this data, download and unzip the tarball. Clone the Github repository and point to the 2023-05-23-TMI-processed-data directory within a project using the scripts/TMI-sourmash-explore.R script. Install the packages used in the script if necessary.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.3

FAIR Score

13%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

Assigned Domain

Subfield

Genetics

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

47%

Source

Open Alex

Keywords

metagenomics

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00