The global distribution of plants used by humans datasets: list of utilised species, occurrence data and model outputs at 10 arc-minutes spatial resolution

Pironon, Samuel;Ondo, Ian;Diazgranados, Mauricio;Allkin, Robert;Baquero, Andrea C.;Cámara-Leret, Rodrigo;Canteiro, Cátia;Dennehy-Carr, Zoe;Govaerts, Rafaël;Hargreaves, Serene;Hudson, Alex J.;Lemmens, Roel;Milliken, William;Nesbitt, Mark;Patmore, Kristina;Schmelzer, Gaby;Turner, Rob M.;van Andel, Tinde R.;Ulian, Tiziana;Antonelli, Alexander;Willis, Kathy J.

Description

Datasets and model outputs used to map the global distribution of utilised plants by humans. The folder is composed of two subfolders raw_data and processed_data containing respectively the list of utilised plant species modelled -utilised_plants_species_list.csv-, and their occurrence data -occurrence_data.zip- and predicted distribution -species_proba_per_cell.rds-. The file utilised_plants_species_list.csv in the raw_data folder contains a list of 35687 plant species (and hybrids) used by humans and 10 plant use categories with the following 14 fields:plant_ID: plant identifier number ranging from between 1-35687binomial_acc_name: binomial accepted name of the plant speciesauthor_acc_name:  name of the author(s)is_hybrid: logical TRUE or FALSE indicating whether the species is an hybrid or not.AnimalFood: forage and fodder for vertebrate animals only.EnvironmentalUses: examples include intercrops and nurse crops, ornamentals, barrier hedges, shade plants, windbreaks, soil improvers, plants for revegetation and erosion control, wastewater purifiers, indicators of the presence of metals, pollution, or underground water.Fuels: charcoal, petroleum substitutes, fuel alcohols, etc. Given the importance of energy plants for people, those were distinguished from Materials.GeneSources: wild relatives of major crops which may possess traits associated with biotic or abiotic resistance and may be valuable for breeding programs.HumanFood: food for humans only, including beverages and food additives.InvertebrateFood: plants consumed by invertebrates used by humans, such as bees, silkworms, lac insects and edible grubs.Materials: woods, fibers, cork, cane, tannins, latex, resins, gums, waxes, oils, lipids, etc. and their derived products.Medicines: both human and veterinary.Poisons: plants which are poisonous to both vertebrates and invertebrates, both accidentally and intentionally, e.g., for hunting and fishing, molluscicides, herbicides, insecticides.SocialsUses: plants used for social purposes, which cannot be defined as food or medicine, for instance, masticatories, smoking materials, narcotics, hallucinogens and psychoactive drugs, and plants with ritual or religious significance.Totals: total number of uses recorded for a species The zipfile occurrence_data.zip in the processed_data folder contains 35687 Comma Separated Values (CSV) files, one for each species, containing curated geographic occurrence records used to  build species distribution models with the following 14 fields:Species: the binomial accepted name of the speciesFullname:  same as speciesdecimalLongitude: the geographic longitude of the occurrence records of the species in decimal degreesdecimalLatitude: the geographic latitude of the occurrence records of the species in decimal degreescountryCode: a three-letter standard abbreviation for the country of the occurrence localitycoordinateUncertaintyinMeters: indicator for the accuracy of the coordinate location, described as the radius of a circle around the stated point locationyear: year of the observation of the occurrence record of the speciesindividualCount: the number of individuals present at the time of the observationgbifID: unique identifier number for the occurrence from the original databasebasisOfRecords: the type of the individual record, e.g. observation, physical specimen, fossil, living ex-situ, culture collection specimeninstitutionCode: the name of the institution or organization listed as the data publisher on GBIFestablishmentMeans: statement about whether an organism has been introduced to a given place and time through the direct or indirect activity of modern humansis_cultivated_observation: whether or not an organism is cultivatedsourceID: name of the source database The file species_proba_per_cell.rds in the processed_data folder is a R Data Serialization (RDS) file containing a data.table object with the following 3 fields:plant_ID: plant identifier number ranging from between 1-35687proba: species occurrence probabilitycell: raster grid cell number between 1-2251762This object can be used in combination with a raster layer to reconstruct the modelled distribution of each species or retrieve species richness and endemism.

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Metrics

Dataset Index

0.5

FAIR Score

81%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

Assigned Domain

Subfield

Ecological Modeling

Field

Environmental Science

Domain

Physical Sciences

Confidence Score

99%

Source

Open Alex

Keywords

utilised plantspeople-plant interactionsspecies distribution modellingspecies richnessweighted endemismprotected areasIndigenous landsnature's contribution to peoplesustainable usefoodmedicinematerialfuellatitudinal gradienthuman cultural diversityplant diversityglobal mapping

Normalization Factors

FT

51.92

CTw

1.00

MTw

1.00