Published on 01 April 2024

Phased T2T reference genome and pangenome reveal expanded resistance gene analogs in apple domestication

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Su, ying;Yang, Xuanwen;Wang, Yuwei;Jialei, Li;Long, Qiming;Cao, Shuo;Wang, Xu;Liu, Zhenya;Huang, Siyang;Chen, Zhuyifu;Peng, Yanling;Zhang, Fan;Xue, Hui;Cao, Xuejing;Yisilam, Gulbar;Chu, Zhenzhou;Gao, Yuan;Zhang, Mengyan;Zhou, Yongfeng;Liu, Zhongjie;Xiao, Hua;Tian, Xinmin

Description

Phased T2T reference genome and pangenome reveal expanded resistance gene analogs in apple domesticationThe data contains two files, namely genome file and genome annotation file:1. Genome:This file contains 12 genomes for 5 species (cultivar), namely: Malus domestica cv. ‘Golden Delicious’ (GD), Malus domestica cv. ‘Gala’ (Gala), Malus domestica cv. ‘Honeycrisp’ (HC), Malus domestica cv. ‘HFTH1’ (HFTH1), Malus baccata (Mba), Malus sieversii (Msi), and Malus sylvestris (Msy)2. Genome annotation:Corresponding to the genome file.Note: Hap1 and hap2 represent two haplotypes of a species (cultivar), all data used for the construction of pan-genomes and comparative genomics analysis.

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Metrics

Dataset Index

0.8

FAIR Score

73%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

51%

Source

Scholar Data Model

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00