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Grass Phylogeny Working Group III: data repository

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Arthan, Watchara;Baker, William J.;Barrett, Matthew D.;Barrett, Russell L.;Bennetzen, Jeffrey;Besnard, Guillaume;Bianconi, Matheus;Birch, Joanne L.;Catalán, Pilar;Chen, Wenli;Christenhusz, Maarten;Christin, Pascal-Antoine;Clark, Lynn G.;Travis Columbus, J.;Couch, Charlotte;Crayn, Darren M.;Davidse, Gerrit;Dransfield, Soejatmi;Dunning, Luke T.;Duvall, Melvin R.;Ficinski, Sarah Z.;Fisher, Amanda E.;Fjellheim, Siri;Forest, Felix;Gillespie, Lynn J.;Hackel, Jan;Haevermans, Thomas;Hodkinson, Trevor R.;Huang, Chien-Hsun;Huang, Weichen;Humphreys, Aelys M.;Jobson, Richard W.;Kayombo, Canisius J.;Kellogg, Elizabeth A.;Kimeu, John M.;Larridon, Isabel;Letsara, Rokiman;Li, De-Zhu;Liu, Jing-Xia;Londoño, Ximena;Luke, Quentin W.R.;Ma, Hong;Macfarlane, Terry D.;Maurin, Olivier;McKain, Michael R.;McLay, Todd G.B.;Moreno-Aguilar, Maria Fernanda;Murphy, Daniel J.;Nanjarisoa, Olinirina P.;Onjalalaina, Guy E.;Peterson, Paul M.;Rakotonasolo, Rivontsoa A.;Razanatsoa, Jacqueline;Saarela, Jeffery M.;Simpson, Lalita;Snow, Neil W.;Soreng, Robert J.;Sosef, Marc;Thompson, John J.E.;Traiperm, Paweena;Verboom, G. Anthony;Vorontsova, Maria S.;Walsh, Neville G.;Washburn, Jacob D.;Watcharamongkol, Teera;Waycott, Michelle;Welker, Cassiano A.D.;Xanthos, Martin D.;Xia, Nianhe;Zhang, Lin;Zizka, Alexander;Zuloaga, Fernando O.;Zuntini, Alexandre R.

Description

Phylogenetic analyses of the grass family (Poaceae) using nuclear and plastid data.  The data set includes 1153 accessions corresponding to 1133 accepted species. Genomic data was obtained from different sources including target capture, shotgun, transcriptomes and annotated genomes. Nuclear markers (Angiosperm353 gene set) were assembled from short read data using HybPiper or a custom assembly pipeline optimized for low coverage shotgun data. Plastid genes were either retrieved from published plastome sequences or assembled here using getOrganelle. This data set also includes the results for a gene tree-species tree reconciliation analysis using GeneRax.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

77%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

10.5281/zenodo.10996137

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

GNU General Public License v3.0 or later

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

99%

Source

Open Alex

Keywords

PhylogenomicsAngiosperms353grassesPoaceaetarget capturenuclear genomeplastome

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00