Dataset Validation - Concordance Files

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Santos, Renato;Corpas, Manuel

Description

This dataset contains concordance metrics between high and low-coverage VCF files of the IBS001 genome, belonging to an IBS (Iberian Populations in Spain) individual. This genome was sequenced at 40X coverage in both Illumina and MGI sequencing platforms, and then respectively downsampled to 1x coverage with samtools. Genotype likelihood calculations and calling was performed using bcftools, and imputation of the low-coverage genotypes was performed using GLIMPSE1.See related materials at: https://doi.org/10.25452/figshare.plus.c.6347534

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.9

FAIR Score

81%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

55%

Source

Scholar Data Model

Keywords

GenomicsGene expression (incl. microarray and other genome-wide approaches)

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00