Additional file 3 of The gene expression profile and cell of origin of canine peripheral T-cell lymphoma

Additional file 3: Supplementary Table 1A. Signalment and clinical features of dogs in this study. Supplementary Table 1B. Flow cytometric features of canine PTCLs. Supplementary Table 1C. Flow cytometric features of normal control nodal and circulating lymphocytes. Supplementary Table 1D. Flow cytometric features of normal control canine thymocytes. Supplementary Table 2A. Top 500 differentially expressed genes in canine CD4+ PTCL compared to control canine CD4+ lymphocytes. Supplementary Table 2B. Normalized RNA-seq read counts. Supplementary Table 3A. GSEA results for MSigDB gene sets using the Broad Institute GSEAPreranked tool. Supplementary Table 3B. GSEA results for curated gene sets using the Broad Institute GSEAPreranked tool. Supplementary Table 4A. GSEA results for MSigDB gene sets using clusterProfiler. Supplementary Table 4B. GSEA results for curated gene sets using clusterProfiler. Supplementary Table 5. GSVA scores. Supplementary Table 6A. Novogene RNA-seq QA/QC report. Supplementary Table 6B. MultiQC RNA-seq QA/QC report. Supplementary Table 7. Software programs and packages. Supplementary Table 8. Correlation of protein expression by flow cytometry and gene expression by RNA-seq.