Additional file 4 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions
View DatasetMason, Kaishu;Sathe, Anuja;Hess, Paul R.;Rong, Jiazhen;Wu, Chi-Yun;Furth, Emma;Susztak, Katalin;Levinsohn, Jonathan;Ji, Hanlee P.;Zhang, Nancy
Description
Additional file 4: Table S1. A list of (fibroblast, tumor)+ genes found by niche-DE in the integrated 10X liver metastasis colorectal cancer data. Table S2. The list of enriched pathways found by enrichR using the gene list in table S1. Table S3. The list of ligand-receptor pairs found by niche-LR for fibroblasts near tumor cells.
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Publication Details
DOI
Publisher
figshare
Subfield
Molecular Biology
Field
Biochemistry, Genetics and Molecular Biology
Domain
Life Sciences
Confidence Score
55%
Source
Scholar Data Model
Keywords
GeneticsFOS: Biological sciences