Additional file 3 of Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments
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Additional file 3: Dataset S2. Sheet1: Assembly details of different sequencing methods; Sheet2: Stats of MAGs derived from different sequencing methods and refined MAGs; Sheet3: Draft MAGs used to compare the effects of different assemble methods; Sheet4: Classification, quality, details, coverage depth, and gene number of refined MAGs; Sheet5: Pathway completeness of all refined MAGs calculated by KEGGDecoder; Sheet6: Gene numbers of each pathway annotated by METABOLIC software; Sheet7: Glycoside hydrolases (GH) identified by CAZy searches of the MAGs. GH families that contain enzymes that are not specifically involved in degradation were specifically identified by Pfam or EC numbers in the annotations; Sheet8: Peptidase genes identified against MEROPS database by METABOLIC software; Sheet9: Anaerobic hydrocarbon degradation genes annotated by METABOLIC software.
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Cited on 23 August 2023
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Publication Details
Subfield
Molecular Biology
Field
Biochemistry, Genetics and Molecular Biology
Domain
Life Sciences
Confidence Score
47%
Source
Scholar Data Model