Additional file 3 of Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

View Dataset
Zhang, Zhi-Feng;Liu, Li-Rui;Pan, Yue-Ping;Pan, Jie;Li, Meng

Description

Additional file 3: Dataset S2. Sheet1: Assembly details of different sequencing methods; Sheet2: Stats of MAGs derived from different sequencing methods and refined MAGs; Sheet3: Draft MAGs used to compare the effects of different assemble methods; Sheet4: Classification, quality, details, coverage depth, and gene number of refined MAGs; Sheet5: Pathway completeness of all refined MAGs calculated by KEGGDecoder; Sheet6: Gene numbers of each pathway annotated by METABOLIC software; Sheet7: Glycoside hydrolases (GH) identified by CAZy searches of the MAGs. GH families that contain enzymes that are not specifically involved in degradation were specifically identified by Pfam or EC numbers in the annotations; Sheet8: Peptidase genes identified against MEROPS database by METABOLIC software; Sheet9: Anaerobic hydrocarbon degradation genes annotated by METABOLIC software.

Citations (1)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

85%

Citations

1

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

figshare

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

47%

Source

Scholar Data Model

Keywords

MicrobiologyFOS: Biological sciences

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00