Additional file 16 of Transcriptional and epigenetic changes during tomato yellow leaf curl virus infection in tomato

Additional file 16. Datasets. Dataset S1. Total reads from RNAseq, sRNAseq and WGBS-seq. Dataset S2. Gene Set Enrichment Analysis (GSEA) of the differentially expressed genes. Dataset S3. Clustering of the differentially expressed genes. Dataset S4. sRNA-seq statistics. Dataset S5. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 7 dpi. Dataset S6. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 14 dpi. Dataset S7. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 21 dpi. Dataset S8. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 7 dpi. Dataset S9. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 14 dpi. Dataset S10. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 21 dpi. Dataset S11. miRNAs expressed in tomato during TYLCV infection. Dataset S12. Degradome-seq analysis in tomato during TYLCV infection. Dataset S13. Predicted target genes for the sRNAs. Dataset S14. Differentially expressed phasiRNAs in tomato during TYLCV infection. Dataset S15. WGBS statistics.