<b><i>Muntiacus nigripes</i></b>

The Hainan muntjac (Muntiacus nigripes) is a wild animal endemic to Hainan, China.In this study, we successfully assembled the Hainan muntjac haplotype genome at the chromosome level using Pacbio long read and long sequencing technologies and Hi-C data. The final assembly size was 2.66 Gb, with allele and scaffold N50 values of 29.27 and 700.27 Mb, respectively, and we scaffolded the genome sequence onto three chromosomes. The genome contains a total of 21,451 genes and 10,056 gene families.