Additional file 2 of Genome-wide detection of positive and balancing signatures of selection shared by four domesticated rainbow trout populations (Oncorhynchus mykiss)

Additional file 2: Table S1. Shared signatures of selection between the French lines (LB, LC and SY) and the American pooled population (HA) detected by the XP-EHH statistics. Table S2. List of ROH islands for the LB population. Table S3. List of ROH islands for the LC population. Table S4. List of ROH islands for the SY population. Table S5. List of ROH islands for the HA population. Table S6. List of significant signatures of selection identified by iHS for the LB population. Table S7. List of significant signals of selection identified by iHS for the LC population. Table S8. List of significant signals of selection identified by iHS for the SY population. Table S9. List of significant signals of selection identified by iHS for the HA population. Table S10. iHS and ROH values per population within the nine overlapping regions detected among the four populations. Table S11. List of the 253 genes included in the nine shared genomic regions. In bold, genes identified as linked to domestication in the literature. Table S12. List and functions of the 17 genes annotated in the three homozygous regions (chr2_a, chr2_c and chr15_a) shared by the four rainbow trout populations, and the 15 genes in the six other regions previously identified in the literature as signatures of selection [159, 166–183]. Table S13. List of the heterozygous regions (i.e., large regions without ROH) for the LB population. Table S14. List of the heterozygous regions (i.e., large regions without ROH) for the LC population. Table S15. List of the heterozygous regions (i.e., large regions without ROH) for the SY population. Table S16. List of the heterozygous regions (i.e., large regions without ROH) for the HA population. Table S17. List of the 29 genes included in the four heterozygous genomic regions. Table S18. Percentage of protein homology between rainbow trout and nine other vertebrate species for the genes annotated in the heterozygous chr10_a, chr13_a, chr19_a and chr19_b regions.