Published on 01 January 2015

27_Clusters_excelFile

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Belanger, Kenneth D.;Ay, Ahmet;Larson, Nate

Description

Clusters formed as part of a study to determine the function of kap108 in Saccharomyces cerevisiae. Genes clustered were those that underwent at least a 40% change in differential expression between wild-type and kap108∆ cells following the addition of oxidative stress. Three oxidative time points were considered--10 min oxidative stress, 60 min oxidative stress, and 60 min oxidative stress followed by 60 min no stress--and clustering was done based on how differential gene expression between mutant and wild-type cells changed between time points. A 20% increase was considered "Up", a 20% decrease was considered "Dn", and everything else was considered "Nc". With four time points considered, having three possibilities for each meant 27 possible clusters. This file contains information on all 27 clusters, including the genes within them, graphical depictions of how differential expression changes for each gene over all four time points, a summary of YEASTRACT Gene Ontology analysis for each cluster, and links to full YEASTRACT Gene Ontology analyses.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.3

FAIR Score

13%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

figshare

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

46%

Source

Scholar Data Model

Keywords

Molecular Biology60102 BioinformaticsFOS: Computer and information sciences

Normalization Factors

FT

15.38

CTw

1.00

MTw

1.00