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Published on 01 January 2015

Survey of 3 prime GG gRNA sites in 8 genomes

View Dataset
Roberson, Elisha

Description

gRNA sites with a 3' GG motif adjacent to the PAM site have been shown to exhibit substantially higher genome-editing efficiency in C. elegans. I scanned 6 model genomes (Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Mus musculus, and Homo sapiens) and two non-model genomes (Sus scrofa and Loxodonta africana) for these motifs using Ensembl Release 79 reference genomes. This dataset compiles for each species the gRNA sites observed, number of observations, location, and genes overlapping, as well as for each gene a tabulation of how many times a given gRNA class overlaps it.

Citations (3)

Mentions (1)

Metrics

Dataset Index

3.2

FAIR Score

81%

Citations

3

Mentions

1

Metrics Over Time

Publication Details

DOI

Publisher

figshare

Assigned Domain

Subfield

Plant Science

Field

Agricultural and Biological Sciences

Domain

Life Sciences

Confidence Score

95%

Source

Open Alex

Keywords

60102 BioinformaticsFOS: Computer and information sciencesBiological Engineering

Normalization Factors

FT

15.38

CTw

1.00

MTw

1.00