Published on 01 January 2016

Structure prediction and functional analyses of a thermostable lipase obtained from <i>Shewanella putrefaciens</i>

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Faez Iqbal Khan;Nizami, Bilal;Razique Anwer;Ke-Ren Gu;Bisetty, Krishna;Md. Imtaiyaz Hassan;Wei, Dong-Qing

Description

Previous experimental studies on thermostable lipase from Shewanella putrefaciens suggested the maximum activity at higher temperatures, but with little information on its conformational profile. In this study, the three-dimensional structure of lipase was predicted and a 60 ns molecular dynamics (MD) simulation was carried out at temperatures ranging from 300 to 400 K to better understand its thermostable nature at the molecular level. MD simulations were performed in order to predict the optimal activity of thermostable lipase. The results suggested strong conformational temperature dependence. The thermostable lipase maintained its bio-active conformation at 350 K during the 60 ns MD simulations.

Citations (1)

Mentions (0)

Metrics

Dataset Index

2.4

FAIR Score

85%

Citations

1

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Taylor & Francis

Assigned Domain

Subfield

Organic Chemistry

Field

Chemistry

Domain

Physical Sciences

Confidence Score

46%

Source

Scholar Data Model

Keywords

BiophysicsBiochemistry29999 Physical Sciences not elsewhere classifiedFOS: Physical sciencesGeneticsFOS: Biological sciencesBiotechnology39999 Chemical Sciences not elsewhere classifiedFOS: Chemical sciencesSociologyFOS: Sociology69999 Biological Sciences not elsewhere classified80699 Information Systems not elsewhere classifiedFOS: Computer and information sciencesComputational Biology

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00