Published on 01 January 2024

Additional file 2 of Empirical versus estimated accuracy of imputation: optimising filtering thresholds for sequence imputation

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Nguyen, Tuan V.;Bolormaa, Sunduimijid;Reich, Coralie M.;Chamberlain, Amanda J.;Vander Jagt, Christy J.;Daetwyler, Hans D.;MacLeod, Iona M.

Description

Additional file 2: Detail statistics of the analysis. Excel file containing three sheets. Sheet 1 - Statistics on Phasing result between Dosage (DS) vs Genotype likelihoods (GT) mode. Sheet 2 – Correlation statistics between different mode of running of Beagle and MINIMAC4. Sheet 3 – Correlation statistics when imputing from LD or HD across 3 programs Beagle 5.2, MINIMAC4 and IMPUTE5.

Citations (1)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

13%

Citations

1

Mentions

0

Metrics Over Time

Publication Details

Assigned Domain

Subfield

Plant Science

Field

Agricultural and Biological Sciences

Domain

Life Sciences

Confidence Score

56%

Source

Open Alex

Keywords

GeneticsFOS: Biological sciencesBiological Sciences not elsewhere classifiedInformation Systems not elsewhere classifiedCancer

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00