Additional file 4: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

Number of enhancer candidates overlapping with TEs in individual TE families. TE Superfamily column states which TE superfamily the TEs belong to, the TE family column provides the TE family IDs, the family members column lists the total number of elements remaining after removing short and intronic TEs (see methods). For V2-IST, Husk and total enhancer candidates, the number of candidates overlapping at least 80% with TEs within a family and the percent of TEs overlapping with enhancer candidates within the particular family are shown. In the p-val column, the p values calculated using the binomial test with Bonferoni correction are given for the total number of enhancer-containing TEs in a given TE family. The cells highlighted in yellow indicate the TE families significantly enriched for enhancer-containing TEs. (XLSX 26 kb)