Sequence File 2: FASTA of Aligned NACHT Domain Only

Hickle, Elisabeth;Nguyen, Lienan;Henthorn, Tabrina;Bryant, Ty

Description

Sequence File 2: FASTA sequence alignment file. Sequences for NOD2 were collected on Ensembl and trimmed to just the NACHT domain using HMMER and aligned in AliView. Contains aligned protein coding sequences for the NACHT domain within the NOD2 sequence for 15 fish species: Blue Tilapia (Oreochromis aureus), Bluefin Tuna (Thunnus thynnus), Atlantic Mackerel (Scomber scombrus), Ballan Wrasse (Labrus bergylta), Clownfish (Amphiprion ocellaris), Zebrafish (Danio rerio), Brown Trout (Salmo trutta), Channel Catfish (Ictalurus punctatus), Goldfish (Carassius auratus), Japanese Medaka (Oryzias latipes), Atlantic Salmon (Salmo salar), Chinook Salmon (Oncorhynchus tshawytscha), Coho Salmon (Oncorhynchus kisutch), Atlantic Herring (Clupea harengus), and Barramundi/Asian Seabass (Lates calcarifer).

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.4

FAIR Score

85%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

figshare

License

Creative Commons Attribution 4.0 International

Assigned Domain

Subfield

Ophthalmology

Field

Medicine

Domain

Health Sciences

Confidence Score

30%

Source

Scholar Data Model

Keywords

Bioinformatics and computational biology not elsewhere classified

Normalization Factors

FT

63.46

CTw

1.00

MTw

1.00