Additional file 2: Table S1. of Wheat WCBP1 encodes a putative copper-binding protein involved in stripe rust resistance and inhibition of leaf senescence

Li, Xin;Taiguo Liu;Wanquan Chen;Shengfu Zhong;Huaiyu Zhang;Zongxiang Tang;Zhijian Chang;Wang, Ling;Zhang, Min;Liqin Li;Hefei Rao;Zhenglong Ren;Peigao Luo

Description

. Detailed information on 112 ESTs. A BLAST search was performed using BLASTX in NCBI. In silico mapping was performed using the IWGSC draft wheat sequence database. Table S2. BLAST searches performed for the forward subtraction clones found in the stripe rust-resistant genotype L693. Table S3. The primers used to amplify ESTs. Primer pairs were only designed for 62 out of the 112 ESTs because the remaining ESTs were too short to be used for primer design. Table S4. Primers were designed according to the sequence of the contig (3837062) carrying the polymorphic amplicon, which was located on wheat chromosome 1B ( http://www.wheatgenome.org/ ). These amplicons were used to determine the linkage relationship between the markers and the stripe rust resistance gene in L693. Table S5. Results of the amplification of 5 WCBP1-linked genetic markers in an F2 population derived from crosses between L661 and L693 and between L693 and L661. The genotypes (RR, Rr, rr) of the F2 individuals were determined according to the phenotypes of the corresponding F2:3 families; "A" and "B" for the individual F2 populations were derived from crosses between L661 and L693 and between L693 and L661, respectively. R represents the same amplicon as the resistant parent L693; S represents the same amplicon as the susceptible parent L661; H represents the heterozygous condition. The yield components of the F2 plants, including the number of grains per ear (N s ), the total grain weight per ear (T w ) and the 1000-grain weight (S w ), are provided. â \â represents a missing yield component in the F2 plants. Table S6. The sequences of seven primer pairs designed according to the sequence of a cloned candidate gene in silico; these primers were used for PCR-based gene cloning from genomic DNA. Table S7. Primers for q-PCR analysis. (ZIP 94 kb)

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Metrics

Dataset Index

0.9

FAIR Score

85%

Citations

1

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0

Metrics Over Time

Publication Details

DOI

Publisher

Figshare

License

CC BY + CC0

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

47%

Source

Scholar Data Model

Keywords

BiochemistryMicrobiologyFOS: Biological sciencesGeneticsMolecular BiologyPharmacologyEvolutionary Biology59999 Environmental Sciences not elsewhere classifiedFOS: Earth and related environmental sciences39999 Chemical Sciences not elsewhere classifiedFOS: Chemical sciencesEcology69999 Biological Sciences not elsewhere classifiedHematologyPlant Biology

Normalization Factors

FT

51.92

CTw

1.00

MTw

1.00