3D protein structures for all 26 maize Nested Association Mapping (NAM) founder lines predicted by AlphaFold2

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Wang, Shuai;Ramstein, Guillaume P.;Song, Baoxing

Description

This dataset presents 3D structures of proteins for all 26 maize Nested Association Mapping (NAM) founder lines predicted by AlphaFold2.Protein structure prediction was performed using AlphaFold v2.0.0 with parameters preset as reduced_dbs as described in the AlphaFold database publication: Tunyasuvunakool, K., Adler, J., Wu, Z. et al. Highly accurate protein structure prediction for the human proteome. Nature 596, 590–596 (2021). https://doi.org/10.1038/s41586-021-03828-1This dataset includes 26 compressed files, totaling about 80GB.For each of the 26 NAM founder lines, the protein structures are organized into separate folders based on their corresponding chromosomes. Each 3D protein structure is stored in its own folder, which is named after the protein ID.The counts of 3D protein structure for each NAM founder line are as follows:B73: 68262B97: 29161CML103: 28880CML228: 29644CML247: 29046CML277: 28981CML322: 28887CML333: 28968CML52: 29424CML69: 28996HP301: 28859Il14H: 28950Ki11: 29055Ki3: 28939Ky21: 29182M162W: 29295M37W: 28897Mo18W: 28915Ms71: 29445NC350: 29048NC358: 29096Oh43: 29117Oh7B: 29162P39: 28993Tx303: 29150Tzi8: 29297Total: 795649

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Mentions (0)

Metrics

Dataset Index

0.1

FAIR Score

85%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

43%

Source

Scholar Data Model

Keywords

Structural biology (incl. macromolecular modelling)Statistical and quantitative genetics

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00