Genome Assemblies For "Versatile Genome Assembly Evaluation With Quast-Lg"
Description
De novo genome assemblies ofYeast_PB (S. cerevisiae, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)Yeast_NP (S. cerevisiae, genome size: 12.1 Mb): Canu, Flye, MaSuRCA (from Illumina pair-ends and Oxford Nanopores)Worm_PB (C. elegans,genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)Fly_MP (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)Human_MP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)Human_NP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopores)Each pack is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information and other human datasets assemblies please visit http://cab.spbu.ru/software/quast-lg/ or write to [email protected].
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Publication Details
Subfield
Molecular Biology
Field
Biochemistry, Genetics and Molecular Biology
Domain
Life Sciences
Confidence Score
96%
Source
Open Alex