Dataset - Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production

Narayanan, Bharath;Jiang, Wei;Wang, Shengbao;Saez Saez, Javier;Weilandt, Danierl Robert;Masid, Maria;Hesselberg-Thomsen, Victor;Borodina, Irina;Hatzimanikatis, Vassily;Miskovic, Ljubisa

Description

Dataset supporting the results presented in the paper entitled "Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production" by Narayanan, Jiang & Wang et al (https://doi.org/10.1016/j.ymben.2025.06.008).Dataset contains:steady_states.csv- The set of 5,000 steady state profiles consistent with the strain ST10284 built using pyTFA- The sample closest to the mean of all the profiles (index 3191) was used for kinetic model constructionODE nonlinear runs aimed to verify NOMAD-derived designs.Time-series growth data from Saccharomyces cerevisiae cultures measured using the Growth Profiler 960. The values represent green intensity (G-values) from a 24-well plate, recorded every 30 minutes.The corresponding code can be found at the GitHub repository (https://github.com/EPFL-LCSB/NOMAD/tree/master/ME-p-coumaric-acid)

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.8

FAIR Score

79%

Citations

1

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

48%

Source

Scholar Data Model

Keywords

Saccharomyces cerevisiaep-coumaric acidlarge-scale kinetic models of metabolismrational strain designpromoter swappingmetabolic engineeringMetabolic EngineeringMetabolic Engineering/methodsMetabolism

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00