METRIN-KG

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── globi_output.ttl.gz    │   │   ├── taxonomy_output.ttl.gz    │   │   └── trydb_output.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        ├── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv        └── TRYdb_40340.txt.gz