Published on 01 January 2011

Genomic data from the polar bear (<em>Ursus maritimus</em>).

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Li, Bo;Zhang, Guojie;Willersleve, Eske;Wang, J;Wang, Jun

Description

The polar bear (Ursus maritimus) is one of the largest land carnivores, second only to the Alaskan brown bear. In an effort to adapt to the extremely cold Arctic environment, it has evolved many unique characteristics. However, ecological pressures pose a grave threat to the survival of polar bears. The polar bear genome provides significant contributions to research concerning evolution, biodiversity and climate change.
In 2010, the BGI completed the first draft of the genome sequence of a 25 years old male polar bear. Using next-generation sequencing technology (Illumina GA) to obtain about 101-fold genome coverage, and SOAPdenovo, the self-developed short reads assembly method, a high quality draft genome sequence was assembled with an N50 scaffold size of 15.9 megabases (Mb), and function elements annotation was finished. A reference gene set that contained around 21,000 genes for the polar bear was predicted. The transposable elements comprised approximately 37% of the polar bear genome.
The data also includes genome and SNP annotations, with SNP information from 18 polar bear and 10 brown bear individuals sampled from Greenland and Alaska.

Citations (16)

Mentions (0)

Metrics

Dataset Index

8.9

FAIR Score

31%

Citations

16

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

GigaScience

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

45%

Source

Scholar Data Model

Keywords

Genomic

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00