Xenium In Situ spatial transcriptomics for HCC samples

Rao, Narein;Kumar, Tanush;Kazemi, Dina;HOU, SHAOZHI;Khakpoor, Atefeh;Eapen, Merrin Mary;Pai, Rhea;Qiao, Liang;Mishra, Archita;Ginhoux, Florent;Kok Yen Chan, Jerry;George, Jacob;Sharma, Ankur;Zafar, Hamim

Description

This dataset contains the raw Xenium spatial transcriptomics output for two HCC samples (M293 and M316) profiled using a custom gene panel. The following raw data files from the Xenium Analyser machine are included for both samples, with the sample ID mentioned as the prefix of each file:transcripts.parquettranscripts.zarr.zipmorphology.ome.tifmorphology_focus_0000.ome.tifmorphology_focus_0001.ome.tifmorphology_focus_0002.ome.tifmorphology_focus_0003.ome.tif

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

85%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

figshare

License

Creative Commons Attribution 4.0 International

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

49%

Source

Scholar Data Model

Keywords

Genomics and transcriptomics

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00