Published on 01 January 2019

Genomic data of Nanmaohu Park vascular plant specimen, RL0301

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Liu, Huan;Wei, Jinpu;Yang, Ting;Mu, Weixue;Song, Bo;Yang, Tuo;Fu, Yuan;Wang, Xuebin;Hu, Guohai;Li, Wangsheng;Zhou, Hongcheng;Chang, Yue;Chen, Xiaoli;Chen, Hongyun;Cheng, Le;He, Xuefei;Cai, Hechen;Cai, Xianchu;Wang, Mei;Li, Yang;Yang, Jinlong;Wang, Yu;Mu, Ranchang;Liu, Jie;Zhao, Jianming;Huang, Ziheng;Liu, Xin

Description

We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).
Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.
There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level.
This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001523. Preliminary identification is that it is of the family Annonaceae.
The K-mer distribution of the sequencing predicted the genome size to be Not recordedbp. We have generated 61580000000bp of data, which gives a theoretical coverage of x.

Citations (1)

Mentions (0)

Metrics

Dataset Index

1.1

FAIR Score

31%

Citations

1

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

GigaScience Database

Assigned Domain

Subfield

Plant Science

Field

Agricultural and Biological Sciences

Domain

Life Sciences

Confidence Score

39%

Source

Scholar Data Model

Keywords

ImagingGenomic

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00