Published on 01 January 2021

kraken2 database of nematode genomes for host decontamination

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Angelova, Angelina

Description

kraken2 database of nematode genomes for host decontamination (+ human)Collected assemblies: Homo sapiens (GRCh38.p13),Caenorhabditis inopinata (Sp34_v7),Caenorhabditis nigoni (nigoni.pc_2016.07.14),Caenorhabditis elegans (WBcel235),Caenorhabditis briggsae (CB4),Caenorhabditis tropicalis (Ctrp_NIC203),Oscheius tipulae (ASM1342590v1),Pristionchus pacificus (El Paco v. 4),Ascaris suum (ASM1343314v1),Brugia pahangi (ASM1207055v1),Steinernema carpocapsae (ASM75764v3),Strongyloides ratti (S_ratti_ED321),Heterodera glycines (ASM414822v2),Haemonchus contortus (haemonchus_contortus_MHCO3ISE_4.0)

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Zenodo

Keywords

microbiomeMicrobiotanepheleWhole Genome Sequencingwhile genome sequencing