Additional file 4: of ‘apparent’: a simple and flexible R package for accurate SNP-based parentage analysis in the absence of guiding information

Examples of the three different output files produced by the ‘apparent’ package. Worksheet 1: apparent-Triad-All, a complete sorted table of all 225,302 triads considered in the A. arguta example (only the first and last 10 rows are shown, to reduce file size). Worksheet 2: apparent-Triad-Sig, a reduced list reporting only those triads deemed true, based on the user-defined significance level (e.g. 99%). Worksheet 3: apparent-Dyad-Sig, the statistically significant results of the dyad analysis when the female parent of Family 1 (cv. ‘Dumbarton Oaks’) was removed from the population. (XLSX 51 kb)