Synthetic and Augmented Transposable Element Datasets for Classification and Curation Benchmarks

Directory structure and dataset contentsThe Classification directory contains three FASTA files:r.1.5_all_dataaug.fasta:Database including real and synthetic sequences, where synthetic data were generated using data augmentation techniques.r.1.5_all_GAN_GROUPED_calibrated_augmented.fasta:Database including real and synthetic sequences, where synthetic data were generated using a grouped GAN approach (two GANs: one trained on Class I TEs and one on Class II TEs).r.1.5_all_GAN_SIMPLE_calibrated_augmented.fasta:Database including real and synthetic sequences, where synthetic data were generated using a single, simple GAN model.The Curation directory contains two FASTA files:synthetic_dataset_with_imperfections.fasta:Database including real and synthetic sequences, generated across five experimental scenarios, where synthetic sequences were further modified by introducing imperfections and fragmentations at levels of 0.15 and 0.3.synthetic_dataset_without_imperfections.fasta:Database including real and synthetic sequences, generated across the same five experimental scenarios, without introducing imperfections or fragmentations.