Additional file 2 of Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis

In this excel file we provide the results from clustering analysis of the biggest connected component of each chromosome, in order to assist future experimental studies. For each component, we report the results from those values of α and θ yielding the best partition according to the MI ratio criteria. We report the clustering parameters, the resulting MI ratio, the number of obtained modules per component, the number of lncRNAs, protein-coding gene, as well as the overall number of nodes for each component. Note when the genomic coordinates of a gene and a lncRNA overlap, both the gene and the lncRNA name are reported for the same node. Sheet 2 of this file contains the results of GO/KEGG enrichment analysis for the modules of each chromosome’s biggest component. (XLSX 25 kb)