Additional file 2 of Energy metabolism and adaptation to hypoxia in the non-photosynthetic green alga Leontynka

Additional file 2: Table S1 SSU rRNA of prokaryotes identified in Leontynka metatranscriptomes using PhyloFlash. Table S2 Bacterial contaminants identified in Leontynka metatranscriptomes. Table S3 Proteins from Chlamydomonas reinhardtii used to test the automatic prediction tools. Table S4 Accuracy of selected predictors as tested on mitochondrial proteome of C. reinhardtii. Table S5 Accuracy of selected predictors as tested on plastid proteome of C. reinhardtii. Table S6 Accuracy of selected predictors as tested on proteins that were experimentally localized in the mitochondrion of C. reinhardtii. Table S7 Accuracy of selected predictors as tested on proteins that were experimentally localized in the plastid of C. reinhardtii. Table S8 Functional annotations, amino acid sequences, and predicted localization of Leontynka pallida proteins investigated in this study. Table S9 Functional annotation, amino acid sequences, and predicted localization of Leontynka elongata proteins investigated in this study. Table S10 Functional annotation, amino acid sequences, and predicted localization of C. reinhardtii proteins investigated in this study. Table S11 Functional annotation, amino acid sequences, and predicted localization of Polytomella parva proteins investigated in this study. Table S12 General features of cells used to define position of mitochondria. Table S13 Source data for Supporting Figure S14. Measurements are listed in % and px. Table S14 Functional annotation, predicted localization, and presence of F-cluster in FeFe hydrogenases. Table S15 Functional annotation, amino acid sequences, and predicted localization of PFO, FeFe hydrogenase, its maturases, and PFO in Chlamydomonadales. Table S16 Source data for Additional file 1: Figs. S3 and S4, and manual examination of typical features of plastid transit peptides or mitochondrial transit peptides in selected proteins. Table S17 Functional annotation, amino acid sequences, and predicted localization of Chlamydomonadales strain NrCl902 investigated in this study.