Processed Hi-C contact matrices for "Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization"

Miura, Hisashi

Description

Processed Hi-C interaction matrices (iterative correction) saved in .hic format (40kb bins). .hic files were generated by juicer pipeline using processed Hi-C interaction matrices. Only cis interactions were available. To extract the data, please see https://github.com/aidenlab/juicer/wiki/Data-Extraction

Citations (3)

https://doi.org/10.5281/zenodo.3371884
MDC
Cited on 01 January 2026
Weight: 1.00
https://doi.org/10.2142/biophysico.bppb-v19.0018
MDC
Cited on 01 January 2022
Weight: 1.46
https://doi.org/10.1038/s41588-019-0474-z
MDC
Cited on 12 August 2019
Weight: 1.00

Mentions (4)

https://github.com/kuzobuta/hic_paper_NG_2019
Software Heritage
Mentioned on 20 June 2024
Weight: 1.59
https://github.com/NailouZhang/hic_paper_NG_2019
Software Heritage
Mentioned on 23 June 2023
Weight: 1.53
https://github.com/geng-lee/hic_paper_NG_2019
Software Heritage
Mentioned on 25 February 2022
Weight: 1.46
https://github.com/JianZhangSMU/hic_paper_NG_2019
Software Heritage
Mentioned on 25 July 2020
Weight: 1.23

Metrics

Dataset Index

3.9

FAIR Score

73%

Citations

Mentions

Metrics Over Time

Publication Details

DOI

10.5281/zenodo.3371884

Publisher

Zenodo

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

99%

Source

Open Alex

Keywords

Hi-C

Normalization Factors

30.77

CTw

1.00

MTw

1.00