Version 1

FtsK phylogenetic dataset — sequence alignment and nFtsK region analysis in <i>Mycobacteriaceae</i>

Milcarz, Kornel

Description

Item 1 (FtsK_blast_ref_226_aligned.fasta)
Multiple sequence alignment of FtsK (DNA translocase) from 226 Mycobacteriaceae species and one outgroup (Streptomyces coelicolor A3(2)), generated using MAFFT v7.526 (FFT-NS-2 algorithm). Sequences were retrieved from NCBI via BLASTp using M. smegmatis mc²155 FtsK (ABK76147.1) as query. Dataset includes 107 slow-growing and 118 fast-growing mycobacterial species. Seven sequences with truncations or low identity were excluded prior to alignment. Alignment length: 1407 aa. Generated for phylogenetic analysis and nFtsK conservation study.
Item 2 (nFtsK_sequences.fasta)
Unaligned nFtsK sequences extracted from the FtsK MSA (224 sequences, MAFFT FFT-NS-2) for 224 Mycobacteriaceae species. The nFtsK region was defined as the N-terminal sequence preceding the first transmembrane helix (TM1) of FtsK, determined by Kyte-Doolittle hydrophobicity analysis (window = 19 aa) of M. smegmatis mc²155 FtsK (ABK76147.1; residues 1–151, alignment position 288). Dataset comprises 107 slow-growing and 117 fast-growing species. Generated for nFtsK length and conservation analysis.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

88%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

figshare

License

Creative Commons Attribution 4.0 International

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

35%

Source

Scholar Data Model

Keywords

Microbiology not elsewhere classified

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00