D3-DNA: Data and Model Weights for DNA Discrete Diffusion

Sarkar, Anirban

Description

Data files and pretrained model weights for D3: DNA Discrete Diffusion, a discrete diffusion framework for conditional generation of DNA regulatory sequences.Code: https://github.com/anirbansarkar-cs/D3-DNA-Discrete-DiffusionPackage: d3-dna (pip install d3-dna)This deposit contains LentiMPRA datasets (K562, HepG2, WTC11), LegNet oracle checkpoints for evaluation, a DeepSTARR oracle, and the D3-Transformer diffusion model trained on K562. Additional datasets and model weights will be added in future versions.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

81%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

MIT License

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

55%

Source

Scholar Data Model

Keywords

DNAdiscrete diffusiongenerative modelsMPRAregulatory sequencesdeep learning

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00