Version 1.2.1

ToxicoDB: an integrated database to mine and visualize large-scale toxicogenomic datasets (TGGATEs human dataset)

Kadambat Nair, Sisira;Eeles, Christopher;Ho, Chantal;Beri, Gangesh;Yoo, Esther;Tkachuk, Denis;Tang, Amy;Nijrabi, Parwaiz;Smirnov, Petr;Seo, Heewon;GJ Jennen, Danyel;Haibe-Kains, Benjamin

Description

This data was generated by Igarashi Y, Nakatsu N, Yamashita T, Ono A, Ohno Y, Urushidani T, Yamada H. Open TG-GATEs: a large-scale toxicogenomics database. Nucleic Acids Res [Internet]. 2015 Jan;43(Database issue):D921–7. Available from: http://dx.doi.org/10.1093/nar/gku955 PMCID: PMC4384023. The data have been curated and analyzed using our open-source R package, ToxicoGx (http://bioconductor.org/packages/devel/bioc/html/ToxicoGx.html), and are available publicly in the ToxicoDB web application (www.toxicodb.ca).

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.4

FAIR Score

77%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

Open Access

Assigned Domain

Subfield

Computational Theory and Mathematics

Field

Computer Science

Domain

Physical Sciences

Confidence Score

90%

Source

Open Alex

Keywords

ToxicogenomicsOpen TGGATEsDrug Matrix

Normalization Factors

FT

57.69

CTw

1.00

MTw

1.00