Dataset of tugHall simulations of cell evolution for colorectal cancer

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Nagornov, Iurii

Description

Dataset contains results of multiply parallel calculations using the tugHall simulator. Output data of simulations are variant allele frequencies for four genes (APC, KRAS, TP53, and PIK3CA) related to colorectal cancer. During each simulation tugHall stochastically reproduces Darwinian evolution for cancer cells and calculates clonal heterogeneity. The probabilities of stochastic processes depend on a correspondence matrix between genome information and cancer hallmarks. As a result, tugHall records variant allele frequencies for the final stage of evolution. The number of trials is several million to get rich statistics of stochastic processes. These data can be used for approximate Bayesian computation and other statistical methods to get personalized coefficients for patients with colorectal cancer. The procedure of usage data is explained in our papers [Bioinformatics, 36, 11 (2020) 3597; ISMCO 2020: Mathematical and Computational Oncology (2020) 71] in which the part of these data was used.

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Mentions (0)

Metrics

Dataset Index

1.6

FAIR Score

65%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Mendeley

Assigned Domain

Subfield

Modeling and Simulation

Field

Mathematics

Domain

Physical Sciences

Confidence Score

57%

Source

Scholar Data Model

Keywords

Natural SciencesMathematicsFOS: MathematicsHealth Sciences

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00