Additional file 1 of Identification of DNA methylation signatures associated with poor outcome in lower-risk Stage, Size, Grade and Necrosis (SSIGN) score clear cell renal cell cancer

Additional file 1. Table S1: Detailed summary of RRBS QC parameters and patient data from cohort 1, cohort 2, and normal kidney. Table S2: List of differentially methylated CpGs and the gene(s) they are associated with from cohort 1. Table S3: Full list of GO biological pathways to which the 5929 DMCpGs were associated using GREAT. Table S4: List of kidney-related GO biological pathways to which the 5929 DMCpGs were associated using GREAT. Table S5: Full list of canonical pathways to which the 5744 genes obtained from GREAT were associated in IPA. Table S6: List of differentially methylated CpGs and the gene(s) they are associated with from cohort 2. Table S7: List of 43 CpGs separating aggressive from less aggressive KIRC tumors. Table S8: List of PCR and pyrosequencing primers used in this study.