Published on 01 January 2021

Campylobacter fetus genomes and pangenome for pagoo demo

Ferrés, Ignacio;Iraola, Gregorio

Description

This dataset contains 168 Campylobacter fetus genomes sequenced in the Iraola et al. 2017 study, in GFF format, annotated with prokka. Also it contains its pangenome inferred by roary using default parameters, and metadata for each genome/isolate.

The dataset supports Pagoo's publication, specifically it contains the data to run the following script:

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Metrics

Dataset Index

1.8

FAIR Score

81%

Citations

Mentions

Metrics Over Time

Publication Details

DOI

10.6084/m9.figshare.13622354

Publisher

figshare

Assigned Domain

Subfield

Food Science

Field

Agricultural and Biological Sciences

Domain

Life Sciences

Confidence Score

98%

Source

Open Alex

Keywords

80301 Bioinformatics SoftwareFOS: Computer and information sciencesComputational BiologyMicrobiologyFOS: Biological sciences

Normalization Factors

15.38

CTw

1.00

MTw

1.00