Published on 05 January 2021 |

Version Jan2021

Jan2021 reference datasets for Mitohelper

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Lim, Jean;Thompson, Luke

Description

Reference datasets (Jan 2021 update) for Mitohelper (https://github.com/aomlomics/mitohelper) Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's DevWiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Jan2021.tsv (668,366 records; Jan 2021 update) mitofish.12S.Jan2021.tsv (37,314 records) mitofish.COI.Jan2021.tsv (224,712 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.1

FAIR Score

13%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

33%

Source

Scholar Data Model

Keywords

eDNAfishmetabarcoding

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00