Published on 05 January 2021 |
Jan2021 reference datasets for Mitohelper
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Reference datasets (Jan 2021 update) for Mitohelper (https://github.com/aomlomics/mitohelper) Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's DevWiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Jan2021.tsv (668,366 records; Jan 2021 update) mitofish.12S.Jan2021.tsv (37,314 records) mitofish.COI.Jan2021.tsv (224,712 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza
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Publication Details
Subfield
Molecular Biology
Field
Biochemistry, Genetics and Molecular Biology
Domain
Life Sciences
Confidence Score
33%
Source
Scholar Data Model