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Data from: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

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Denoeud, France;Henriet, Simon;Mungpakdee, Sutada;Aury, Jean-Marc;Da Silva, Corinne;Brinkmann, Henner;Mikhaleva, Jana;Olsen, Lisbeth C.;Jubin, Claire;Cañestro, Cristian;Bouquet, Jean-Marie;Danks, Gemma;Poulain, Julie;Campsteijn, Coen;Adamski, Marcin;Cross, Ismael;Yadetie, Fekadu;Muffato, Matthieu;Louis, Alexandra;Butcher, Stephen;Tsagkogeorga, Georgia;Konrad, Anke;Singh, Sarabdeep;Jensen, Marit F.;Huynh Cong, Evelyne;Eikeseth-Otteraa, Helen;Noel, Benjamin;Anthouard, Véronique;Porcel, Betina M.;Kachouri-Lafond, Rym;Nishino, Atsuo;Ugolini, Matteo;Chourrout, Pascal;Nishida, Hiroki;Aasland, Rein;Huzurbazar, Snehalata;Westhof, Eric;Delsuc, Frédéric;Lehrach, Hans;Reinhardt, Richard;Weissenbach, Jean;Roy, Scott W.;Artiguenave, François;Postlethwait, John H.;Manak, J. Robert;Thompson, Eric M.;Jaillon, Olivier;Du Pasquier, Louis;Boudinot, Pierre;Liberles, David A.;Volff, Jean-Nicolas;Philippe, Hervé;Lenhard, Boris;Crollius, Hugues Roest;Wincker, Patrick;Chourrout, Daniel

Description

Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.

Citations (1)

Mentions (0)

Metrics

Dataset Index

2.2

FAIR Score

77%

Citations

1

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Dryad

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

55%

Source

Scholar Data Model

Keywords

mitogenomicsTunicatamolecular phylogenyIntronsmitochondrial genomeOikopleura dioicaComplete genomeUrochordatesUrochordatatunicateschordatesMixture models

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00