Version 0.1.0

Machine learning models, and training, validation and test datasets for: "Sequence determinants of human gene regulatory elements"

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Sahu, Biswajyoti;Hartonen, Tuomo;Pihlajamaa, Päivi;Wei, Bei;Dave, Kashyap;Zhu, Fangjie;Kaasinen, Eevi;Lidschreiber, Katja;Lidschreiber, Michael;Daub, Carsten O;Cramer, Patrick;Kivioja, Teemu;Taipale, Jussi

Description

This record contains the training, test and validation datasets used to train and evaluate the machine learning models in manuscript: Sahu, Biswajyoti, et al. "Sequence determinants of human gene regulatory elements." (2021).
This record contains also the final hyperparameter-optimized models for each training dataset/task combination described in the manuscript. The README-files provided with the record describe the datasets and models in more detail. The datasets deposited here are derived from the original raw data (GEO accession: GSE180158) as described in the Methods of the manuscript.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

79%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

Open Access

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

72%

Source

Open Alex

Keywords

Gene regulationSTARR-seqDeep learningConvolutional Neural NetworksMachine learning

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00