Version 0.1.0
Machine learning models, and training, validation and test datasets for: "Sequence determinants of human gene regulatory elements"
View DatasetSahu, Biswajyoti;Hartonen, Tuomo;Pihlajamaa, Päivi;Wei, Bei;Dave, Kashyap;Zhu, Fangjie;Kaasinen, Eevi;Lidschreiber, Katja;Lidschreiber, Michael;Daub, Carsten O;Cramer, Patrick;Kivioja, Teemu;Taipale, Jussi
Description
This record contains the training, test and validation datasets used to train and evaluate the machine learning models in manuscript: Sahu, Biswajyoti, et al. "Sequence determinants of human gene regulatory elements." (2021).
This record contains also the final hyperparameter-optimized models for each training dataset/task combination described in the manuscript. The README-files provided with the record describe the datasets and models in more detail. The datasets deposited here are derived from the original raw data (GEO accession: GSE180158) as described in the Methods of the manuscript.
Citations (0)
No citations found
It looks like this dataset has no citations.
Mentions (0)
No mentions found
It looks like this dataset has not been mentioned in any sources.
Metrics Over Time
Publication Details
DOI
Publisher
Zenodo
Subfield
Molecular Biology
Field
Biochemistry, Genetics and Molecular Biology
Domain
Life Sciences
Confidence Score
72%
Source
Open Alex
Keywords
Gene regulationSTARR-seqDeep learningConvolutional Neural NetworksMachine learning