Automated Organization Profile

5) Pathology at Josefshaus, D-44137 Dortmund, Germany

Current S-Index

2.8

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.7

Average Dataset Index per dataset

Total Datasets

4

Total datasets in this organization

Average FAIR Score

76.4%

Average FAIR Score per dataset

Total Citations

1

Total citations to the organization's datasets

Total Mentions

0

Total mentions of the organization's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

IMC data

ometiff: Imaging Data Cell Masks: Masks generated with cellprofiler from ilastik segmentation training cp-output_config: All relevant cellprofiler output and additional configuration files (for example clinical data) necessary to generate the single cell experiments. IMC Data Objects: Single cell experiment RDS files.

Authors

  • Cords, Lena ;
  • Tietscher, Sandra ;
  • Anzeneder, Tobias ;
  • Langwieder, Claus ;
  • Rees, Martin ;
  • De Souza, Natalie ;
  • Bodenmiller, Bernd
0 Citations0 Mentions79% FAIR0.7 Dataset Index
10.5281/zenodo.57690182021

Cancer-Associated Fibroblast Classification in Single-Cell and Spatial Proteomics Data

ometiff: Imaging Data Cell Masks: Masks generated with cellprofiler from ilastik segmentation training cp-output_config: All relevant cellprofiler output and additional configuration files (for example clinical data) necessary to generate the single cell experiments. IMC Data Objects: Single cell experiment RDS files. scRNA-seq_dataobjects: .Rds files containing the clustered breast cancer, colon cancer, HNSCC, NSCLC and PDAC datasets as well as the integrated validation dataset.

Authors

  • Cords, Lena ;
  • Tietscher, Sandra ;
  • Anzeneder, Tobias ;
  • Langwieder, Claus ;
  • Rees, Martin ;
  • De Souza, Natalie ;
  • Bodenmiller, Bernd
0 Citations0 Mentions79% FAIR0.5 Dataset Index
10.5281/zenodo.57690172021

IMC data

ometiff: Imaging Data Cell Masks: Masks generated with cellprofiler from ilastik segmentation training cp-output_config: All relevant cellprofiler output and additional configuration files (for example clinical data) necessary to generate the single cell experiments. IMC Data Objects: Single cell experiment RDS files.

Authors

  • Cords, Lena ;
  • Tietscher, Sandra ;
  • Anzeneder, Tobias ;
  • Langwieder, Claus ;
  • Rees, Martin ;
  • De Souza, Natalie ;
  • Bodenmiller, Bernd
0 Citations0 Mentions79% FAIR0.7 Dataset Index
10.5281/zenodo.75404312021

Cancer-Associated Fibroblast Classification in Single-Cell and Spatial Proteomics Data

ometiff: Imaging Data Cell Masks: Masks generated with cellprofiler from ilastik segmentation training cp-output_config: All relevant cellprofiler output and additional configuration files (for example clinical data) necessary to generate the single cell experiments. IMC Data Objects: Single cell experiment RDS files. scRNA-seq_dataobjects: .Rds files containing the clustered breast cancer, colon cancer, HNSCC, NSCLC and PDAC datasets as well as the integrated validation dataset.

Authors

  • Cords, Lena ;
  • Tietscher, Sandra ;
  • Anzeneder, Tobias ;
  • Langwieder, Claus ;
  • Rees, Martin ;
  • De Souza, Natalie ;
  • Bodenmiller, Bernd
1 Citation0 Mentions69% FAIR0.9 Dataset Index
10.5281/zenodo.75406042021