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Weissenbach, Jean

Genoscope

Current S-Index

2.9

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.4

Average Dataset Index per dataset

Total Datasets

2

Total datasets for this author

Average FAIR Score

45.2%

Average FAIR Score per dataset

Total Citations

2

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Data from: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants (Version: 1)

Bananas (Musa spp.), including dessert and cooking types, are giant perennial monocotyledonous herbs of the order Zingiberales, a sister group to the well-studied Poales, which include cereals. Bananas are vital for food security in many tropical and subtropical countries and the most popular fruit in industrialized countries1. The Musa domestication process started some 7,000 years ago in Southeast Asia. It involved hybridizations between diverse species and subspecies, fostered by human migrations2, and selection of diploid and triploid seedless, parthenocarpic hybrids thereafter widely dispersed by vegetative propagation. Half of the current production relies on somaclones derived from a single triploid genotype (Cavendish)1. Pests and diseases have gradually become adapted, representing an imminent danger for global banana production3, 4. Here we describe the draft sequence of the 523-megabase genome of a Musa acuminata doubled-haploid genotype, providing a crucial stepping-stone for genetic improvement of banana. We detected three rounds of whole-genome duplications in the Musa lineage, independently of those previously described in the Poales lineage and the one we detected in the Arecales lineage. This first monocotyledon high-continuity whole-genome sequence reported outside Poales represents an essential bridge for comparative genome analysis in plants. As such, it clarifies commelinid-monocotyledon phylogenetic relationships, reveals Poaceae-specific features and has led to the discovery of conserved non-coding sequences predating monocotyledon–eudicotyledon divergence.

Authors

  • D'Hont, Angelique ;
  • Denoeud, France ;
  • Aury, Jean-Marc ;
  • Baurens, Franc-Christophe ;
  • Carreel, Françoise ;
  • Garsmeur, Olivier ;
  • Noel, Benjamin ;
  • Bocs, Stéphanie ;
  • Droc, Gaëtan ;
  • Rouard, Mathieu ;
  • Da Silva, Corinne ;
  • Kamel, Jabbari ;
  • Cardi, Céline ;
  • Poulain, Julie ;
  • Souquet, Marlène ;
  • Labadie, Karine ;
  • Jourda, Cyril ;
  • Lengellé, Juliette ;
  • Rodier-Goud, Marguerite ;
  • Alberti, Adriana ;
  • Bernard, Maria ;
  • Correa, Margot ;
  • Ayyampalayam, Saravanaraj ;
  • McKain, Michael R. ;
  • Leebens-Mack, Jim ;
  • Burgess, Diane ;
  • Freeling, Mike ;
  • Mbéguié- A-Mbéguié, Didier ;
  • Chabannes, Matthieu ;
  • Wicker, Thomas ;
  • Panaud, Olivier ;
  • Barbosa, Jose ;
  • Hribova, Eva ;
  • Heslop-Harrison, Pat ;
  • Habas, Rémy ;
  • Rivallan, Ronan ;
  • Francois, Philippe ;
  • Poiron, Claire ;
  • Kilian, Andrzej ;
  • Burthia, Dheema ;
  • Jenny, Christophe ;
  • Bakry, Frédéric ;
  • Brown, Spencer ;
  • Guignon, Valentin ;
  • Kema, Gert ;
  • Dita, Miguel ;
  • Waalwijk, Cees ;
  • Joseph, Steeve ;
  • Dievart, Anne ;
  • Jaillon, Olivier ;
  • Leclercq, Julie ;
  • Argout, Xavier ;
  • Lyons, Eric ;
  • Almeida, Ana ;
  • Jeridi, Mouna ;
  • Dolezel, Jaroslav ;
  • Roux, Nicolas ;
  • Risterucci, Ange-Marie ;
  • Weissenbach, Jean ;
  • Ruiz, Manuel ;
  • Glaszmann, Jean-Christophe ;
  • Quétier, Francis ;
  • Yahiaoui, Nabila ;
  • Wincker, Patrick
1 Citation0 Mentions13% FAIR0.6 Dataset Index
10.5061/dryad.mm54fFebruary 2013

Data from: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate (Version: 1)

Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.

Authors

  • Denoeud, France ;
  • Henriet, Simon ;
  • Mungpakdee, Sutada ;
  • Aury, Jean-Marc ;
  • Da Silva, Corinne ;
  • Brinkmann, Henner ;
  • Mikhaleva, Jana ;
  • Olsen, Lisbeth C. ;
  • Jubin, Claire ;
  • Cañestro, Cristian ;
  • Bouquet, Jean-Marie ;
  • Danks, Gemma ;
  • Poulain, Julie ;
  • Campsteijn, Coen ;
  • Adamski, Marcin ;
  • Cross, Ismael ;
  • Yadetie, Fekadu ;
  • Muffato, Matthieu ;
  • Louis, Alexandra ;
  • Butcher, Stephen ;
  • Tsagkogeorga, Georgia ;
  • Konrad, Anke ;
  • Singh, Sarabdeep ;
  • Jensen, Marit F. ;
  • Huynh Cong, Evelyne ;
  • Eikeseth-Otteraa, Helen ;
  • Noel, Benjamin ;
  • Anthouard, Véronique ;
  • Porcel, Betina M. ;
  • Kachouri-Lafond, Rym ;
  • Nishino, Atsuo ;
  • Ugolini, Matteo ;
  • Chourrout, Pascal ;
  • Nishida, Hiroki ;
  • Aasland, Rein ;
  • Huzurbazar, Snehalata ;
  • Westhof, Eric ;
  • Delsuc, Frédéric ;
  • Lehrach, Hans ;
  • Reinhardt, Richard ;
  • Weissenbach, Jean ;
  • Roy, Scott W. ;
  • Artiguenave, François ;
  • Postlethwait, John H. ;
  • Manak, J. Robert ;
  • Thompson, Eric M. ;
  • Jaillon, Olivier ;
  • Du Pasquier, Louis ;
  • Boudinot, Pierre ;
  • Liberles, David A. ;
  • Volff, Jean-Nicolas ;
  • Philippe, Hervé ;
  • Lenhard, Boris ;
  • Crollius, Hugues Roest ;
  • Wincker, Patrick ;
  • Chourrout, Daniel
1 Citation0 Mentions77% FAIR2.2 Dataset Index
10.5061/dryad.8338January 2011