Automated Author Profile

Susztak, Katalin

University of Pennsylvania

Current S-Index

10.1

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.5

Average Dataset Index per dataset

Total Datasets

19

Total datasets for this author

Average FAIR Score

82.2%

Average FAIR Score per dataset

Total Citations

2

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

The actin and microtubule network regulator WHAMM, is identified as a key kidney disease risk gene

Original blots associated with this original research article.

Authors

  • Mukhi, Dhanunjay ;
  • Kolligundla, Lakshmi ;
  • Andrade-Silva, Magaiver ;
  • Liu, Hongbo ;
  • Doke, Tomohito ;
  • Susztak, Katalin
1 Citation0 Mentions65% FAIR0.7 Dataset Index
10.17632/yyjfghps97.12025

The actin and microtubule network regulator WHAMM, is identified as a key kidney disease risk gene

Original blots associated with this original research article.

Authors

  • Mukhi, Dhanunjay ;
  • Kolligundla, Lakshmi ;
  • Andrade-Silva, Magaiver ;
  • Liu, Hongbo ;
  • Doke, Tomohito ;
  • Susztak, Katalin
0 Citations0 Mentions65% FAIR0.4 Dataset Index
10.17632/yyjfghps972025

Additional file 1 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 1: Table S1. Ligand-receptor pairs between CD8T cells and tumor cells found by niche-LR in the CosMx NSCLC data. Table S2. Ligand-receptor pairs between CD8T cells and tumor cells found via permutation test in the CosMx NSCLC data.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.24993682.v12024

Additional file 2 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 2: Table S1. Description of data quality for liver metastasis 10X Visium data.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.249938062024

Additional file 2 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 2: Table S1. Description of data quality for liver metastasis 10X Visium data.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.24993806.v12024

Additional file 4 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 4: Table S1. A list of (fibroblast, tumor)+ genes found by niche-DE in the integrated 10X liver metastasis colorectal cancer data. Table S2. The list of enriched pathways found by enrichR using the gene list in table S1. Table S3. The list of ligand-receptor pairs found by niche-LR for fibroblasts near tumor cells.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.266669502024

Additional file 4 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 4: Table S1. A list of (fibroblast, tumor)+ genes found by niche-DE in the integrated 10X liver metastasis colorectal cancer data. Table S2. The list of enriched pathways found by enrichR using the gene list in table S1. Table S3. The list of ligand-receptor pairs found by niche-LR for fibroblasts near tumor cells.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.26666950.v12024

Additional file 5 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 5: Table S1. A list of (tumor, fibroblast)- genes found by applying niche-DE only in patient 4 of the manuscript. Table S2. The CODEX protein panel used to generate the CODEX data for patient 4 in the manuscript.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.266669532024

Additional file 1 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 1: Table S1. Ligand-receptor pairs between CD8T cells and tumor cells found by niche-LR in the CosMx NSCLC data. Table S2. Ligand-receptor pairs between CD8T cells and tumor cells found via permutation test in the CosMx NSCLC data.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.249936822024

Additional file 9 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 9: Table S1. A list of gene markers for macrophages when near tumor cells as opposed to hepatocytes as found by niche-DE. Table S2. A list of gene markers for macrophages when hepatocytes as opposed to tumor cells as found by niche-DE. Table S3. A list of ligand-receptor pairs found by niche-LR for macrophages when near tumor cells. Table S4. A list of (macrophage, tumor)+ genes found by niche-DE in the integrated 10X liver metastasis colorectal cancer data. Table S5. The list of enriched pathways found by enrichR using the gene list in table S4. Table S6. The list of enriched pathways found by enrichR using the gene list in table S1.

Authors

  • Mason, Kaishu ;
  • Sathe, Anuja ;
  • Hess, Paul R. ;
  • Rong, Jiazhen ;
  • Wu, Chi-Yun ;
  • Furth, Emma ;
  • Susztak, Katalin ;
  • Levinsohn, Jonathan ;
  • Ji, Hanlee P. ;
  • Zhang, Nancy
0 Citations0 Mentions85% FAIR0.4 Dataset Index
10.6084/m9.figshare.26666965.v12024