Description (for Zenodo upload):This archive provides the full reference audit and compliance documentation supporting the manuscript Entropy-Coupled Operator Dynamics of Light-Induced Coherence Across Quantum, Biological, and Atmospheric Scales. It consolidates DOI-verified references, formatted manuscript citations, and reproducibility checklists into a single, versioned package.Contents include:References_Audit.xlsx and References_for_Zenodo.csv — DOI-verified citation lists with manuscript/SI cross-links.NC_References_Final.docx — formatted Vancouver-style references block for direct manuscript insertion.Preflight_Checklist.pdf — submission audit (ethics placeholders, figures, SI, cover letter).CHANGELOG.md — transparent versioning (v3: updated McPeters reference; v3a: added checklist for transparency).This package ensures that all references are verifiable, compliance checks are documented, and the submission workflow is reproducible.

Description (for Zenodo upload):This archive provides the full reference audit and compliance documentation supporting the manuscript Entropy-Coupled Operator Dynamics of Light-Induced Coherence Across Quantum, Biological, and Atmospheric Scales. It consolidates DOI-verified references, formatted manuscript citations, and reproducibility checklists into a single, versioned package.Contents include:References_Audit.xlsx and References_for_Zenodo.csv — DOI-verified citation lists with manuscript/SI cross-links.NC_References_Final.docx — formatted Vancouver-style references block for direct manuscript insertion.Preflight_Checklist.pdf — submission audit (ethics placeholders, figures, SI, cover letter).CHANGELOG.md — transparent versioning (v3: updated McPeters reference; v3a: added checklist for transparency).This package ensures that all references are verifiable, compliance checks are documented, and the submission workflow is reproducible.

This record provides the source data underlying figures in:“Entropy–Extended Agam Operator: A Unified Quantum–Thermodynamic Framework for Entropy–Coherence Coupling…”Files (individually uploadable and previewable):• FLIM_lifetimes.csv — fluorescence lifetimes (columns: condition, replicate_id, lifetime_tau_ns [, roi_id, time_s, stderr_ns])• PMT_spectra.csv — emission spectra (wavelength_nm, intensity_au, condition, replicate_id)• Spirulina_assay.csv — growth/fluorescence time series (time_h, condition, replicate_id, od600 [, fluorescence_au])• MODTRAN_inputs.csv — radiative-transfer input parameters• MODTRAN_outputs.csv — selected MODTRAN outputs• README_Source_Data.txt — columns/units and figure mapping• Computed_Stats_Summary.tsv — summary stats used in figure legends (n, mean, SD, 95% CI)• ZENODO_MANIFEST.tsv — md5 checksums, file sizes, row counts, column listsFigure mapping:• Fig. 3 → FLIM_lifetimes.csv• Fig. 4 → PMT_spectra.csv• Fig. 5 → Spirulina_assay.csvLicense: CC BY 4.0

This record provides the source data underlying figures in:“Entropy–Extended Agam Operator: A Unified Quantum–Thermodynamic Framework for Entropy–Coherence Coupling…”Files (individually uploadable and previewable):• FLIM_lifetimes.csv — fluorescence lifetimes (columns: condition, replicate_id, lifetime_tau_ns [, roi_id, time_s, stderr_ns])• PMT_spectra.csv — emission spectra (wavelength_nm, intensity_au, condition, replicate_id)• Spirulina_assay.csv — growth/fluorescence time series (time_h, condition, replicate_id, od600 [, fluorescence_au])• MODTRAN_inputs.csv — radiative-transfer input parameters• MODTRAN_outputs.csv — selected MODTRAN outputs• README_Source_Data.txt — columns/units and figure mapping• Computed_Stats_Summary.tsv — summary stats used in figure legends (n, mean, SD, 95% CI)• ZENODO_MANIFEST.tsv — md5 checksums, file sizes, row counts, column listsFigure mapping:• Fig. 3 → FLIM_lifetimes.csv• Fig. 4 → PMT_spectra.csv• Fig. 5 → Spirulina_assay.csvLicense: CC BY 4.0

Source data for the Nature Communications submission “Entropy-extended Agam operator: a unified quantum–thermodynamic framework for entropy–coherence coupling across physical, biological and atmospheric systems”.Contents• combustion_S3B_300s.csv — NaCl (% w/w) vs Δλ (nm) and ΔΓ (nm) at 300 s; mean ± SD; n=3 independent burns; SEM = SD/√n.• modtran_irradiance_vs_altitude.csv — Altitude (km) vs irradiance (W m⁻² nm⁻¹).• modtran_delta_irradiance_vs_SZA.csv — ΔIrradiance (%) vs solar zenith angle (°) at elevations 0/10/20 km.• README_Source_Data.txt — Column definitions, units, license guidance.• (Optional templates included for future uploads: template_FLIM_lifetimes.csv, template_PMT_spectrum.csv, template_Spirulina_assay.csv.)ProvenanceNumeric series extracted from the submitted Supplementary Information tables and MODTRAN runs; instrument settings and replicates are documented in the manuscript Methods.CitationPlease cite this dataset and the associated manuscript. The concept DOI is 10.5281/zenodo.16894225; this record mints a version-specific DOI on publication.LicenseData are released under CC BY 4.0.

Source data for the Nature Communications submission “Entropy-extended Agam operator: a unified quantum–thermodynamic framework for entropy–coherence coupling across physical, biological and atmospheric systems”.Contents• combustion_S3B_300s.csv — NaCl (% w/w) vs Δλ (nm) and ΔΓ (nm) at 300 s; mean ± SD; n=3 independent burns; SEM = SD/√n.• modtran_irradiance_vs_altitude.csv — Altitude (km) vs irradiance (W m⁻² nm⁻¹).• modtran_delta_irradiance_vs_SZA.csv — ΔIrradiance (%) vs solar zenith angle (°) at elevations 0/10/20 km.• README_Source_Data.txt — Column definitions, units, license guidance.• (Optional templates included for future uploads: template_FLIM_lifetimes.csv, template_PMT_spectrum.csv, template_Spirulina_assay.csv.)ProvenanceNumeric series extracted from the submitted Supplementary Information tables and MODTRAN runs; instrument settings and replicates are documented in the manuscript Methods.CitationPlease cite this dataset and the associated manuscript. The concept DOI is 10.5281/zenodo.16894225; this record mints a version-specific DOI on publication.LicenseData are released under CC BY 4.0.

Supplementary Information (S1–S11) accompanying the manuscript “Entropy-Extended Agam Operator and Subarna Equation Reveal Coherence Dynamics Across Biological and Cosmological Scales.” Includes theoretical derivations, computational validation, experimental methods, and complete references. Prepared for submission to Nature Communications.

Supplementary Information (S1–S11) accompanying the manuscript “Entropy-Extended Agam Operator and Subarna Equation Reveal Coherence Dynamics Across Biological and Cosmological Scales.” Includes theoretical derivations, computational validation, experimental methods, and complete references. Prepared for submission to Nature Communications.

DescriptionThis repository contains all raw and processed data, along with analysis code, supporting the manuscript Entropy-Extended Agam Operator with Memory Kernel: Cross-Domain Validation in Combustion, Neural Coherence, and Atmospheric Photon Modulation.The datasets include:Combustion Spectroscopy – PMT/spectroradiometer recordings of salt-treated corn cob combustion at a 15° incline (350–800 nm). Data are provided as raw spectral time series (.csv), processed heatmaps (.png), and MATLAB/Python scripts for entropy estimation and eigenvalue fits.Neural Coherence Data – Calcium imaging (Fluo-4 AM), electrophysiological traces, and oxygen consumption (Seahorse XF) from blue-light/phycocyanin-treated cortical neurons. Includes raw recordings, processed metrics, and analysis scripts in MATLAB and Python.MODTRAN Atmospheric Simulations – Configuration files (.tp5, .json), raw spectral outputs (.txt), and processed plots showing cosmic–solar frequency modulation in the ionosphere (96–288 km). Includes extended scripts with quantum-modified Planck spectrum calculations.All code is included for reproducibility. See the README.md for folder structure, file descriptions, and figure/table mapping to the manuscript.

DescriptionThis repository contains all raw and processed data, along with analysis code, supporting the manuscript Entropy-Extended Agam Operator with Memory Kernel: Cross-Domain Validation in Combustion, Neural Coherence, and Atmospheric Photon Modulation.The datasets include:Combustion Spectroscopy – PMT/spectroradiometer recordings of salt-treated corn cob combustion at a 15° incline (350–800 nm). Data are provided as raw spectral time series (.csv), processed heatmaps (.png), and MATLAB/Python scripts for entropy estimation and eigenvalue fits.Neural Coherence Data – Calcium imaging (Fluo-4 AM), electrophysiological traces, and oxygen consumption (Seahorse XF) from blue-light/phycocyanin-treated cortical neurons. Includes raw recordings, processed metrics, and analysis scripts in MATLAB and Python.MODTRAN Atmospheric Simulations – Configuration files (.tp5, .json), raw spectral outputs (.txt), and processed plots showing cosmic–solar frequency modulation in the ionosphere (96–288 km). Includes extended scripts with quantum-modified Planck spectrum calculations.All code is included for reproducibility. See the README.md for folder structure, file descriptions, and figure/table mapping to the manuscript.